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Best to take the subway as there are no direct bus routes from the Bronx to JFK. Not sure where in the Bronx you are coming from but you'll need to get to the Queens-bound E train and get off at Sutphin/Archer/JFK and take the Airtrain to your terminal. You can take the 4 or 5 to 125th St., transfer to the 6 to 51st St. and transfer to the E there, take the 1 or 2 to Times Sq./42nd St. and transfer to the E or take the D to 7th Ave. and transfer to the E.